Download > Windows > Home & Education > Science > PeptideShaker
Windows icon

PeptideShaker 1.4.0

An application designed for reading of proteomics identification results

Free Download

Your rating: not submitted

PeptideShaker screenshotPeptideShaker is a scientific software tool that will help you read and understand the results of proteomics identification process.

This tool is able to retrieve and display proteomics identification results from various search engines, supporting apps like MS Amanda, OMSSA, MyriMatch, Mascot, X!Tandem, MS-GF+ and mzIdentML.

PeptideShaker is a tool that will offer you a comprehensive interpretation of your proteomics data, being able to combine results from all the supported search engines and to recalculate the PTM localization scores.

PeptideShaker is a multifunctional tool, supporting nine distinct analysis tasks. The software is able to offer you detailed info about peptides and proteins contained in your dataset, compare and combine results provided by the supported search engines, offer detailed info and view of the modification performed in a dataset, inspect and tweak the validation process, mapping 3D structures, examine the quality of the results, or to re-analyze public datasets like they were owned by you.

PeptideShaker can run on any computer having Java Runtime Environment version 1.6 installed, although version 1.7 of Java (or newer) is recommended. PeptideShaker requires at least 4GB of RAM memory. If you are dealing with large datasets, even more memory will be needed. PeptideShaker needs a minimum screen resolution of 1280 x 800 in order to proper display the results, but 1680 x 1050 is recommended.


  • Easily retrieves and displays proteomics identification results.
  • Supports a wide range of applications, including OMSSA, MyriMatch, MS Amanda, Mascot, X!Tandem, etc.


  • Requires significant hardware and system resources.
  • Beginners may find the application confusing and difficult to use.
Name PeptideShaker
Version 1.4.0
Developer | see all products from this developer
Product Homepage PeptideShaker
License Free (Freeware)
Last Week Downloads 0
All Time Downloads 377
Filesize 101.3MB
MD5 Checksum 7B00BEEBF15553F2E9B4A879CEEF39C6
OS Support Windows All
Category Home & Education

100% CLEAN Certification

BadgePeptideShaker has been tested by team against viruses, spyware, adware, trojan, backdoors and was found to be 100% clean. Our editors will recheck this software periodically to assure that it remains clean.


Old Versions

Software Date Added
PeptideShaker 1.4.0 January 18, 2016 - Latest Version
PeptideShaker 0.41.1 July 03, 2015

Download the free PeptideShaker